This page lists links to the raw data for our Placenta paper. The mm9-based BAM and mHap files are provided.

RRBS

Condition Name BAM (mm9) mHap (mm9)
2i 2i_1 2i_1.bam 2i_1.mhap.gz
2i 2i_2 2i_2.bam 2i_2.mhap.gz
2i 2i_3 2i_3.bam 2i_3.mhap.gz
2i 2i_4 2i_4.bam 2i_4.mhap.gz
Epi_Dnmt1 Epi_Dnmt1_1 Epi_Dnmt1_1.bam Epi_Dnmt1_1.mhap.gz
Epi_Dnmt1 Epi_Dnmt1_2 Epi_Dnmt1_2.bam Epi_Dnmt1_2.mhap.gz
Epi_Dnmt1 Epi_Dnmt1_3 Epi_Dnmt1_3.bam Epi_Dnmt1_3.mhap.gz
Epi_Dnmt1 Epi_Dnmt1_4 Epi_Dnmt1_4.bam Epi_Dnmt1_4.mhap.gz
Epi_Dnmt1 Epi_Dnmt1_5 Epi_Dnmt1_5.bam Epi_Dnmt1_5.mhap.gz
Epi_Dnmt3a Epi_Dnmt3a_1 Epi_Dnmt3a_1.bam Epi_Dnmt3a_1.mhap.gz
Epi_Dnmt3a Epi_Dnmt3a_2 Epi_Dnmt3a_2.bam Epi_Dnmt3a_2.mhap.gz
Epi_Dnmt3a Epi_Dnmt3a_4 Epi_Dnmt3a_4.bam Epi_Dnmt3a_4.mhap.gz
Epi_Dnmt3a Epi_Dnmt3a_5 Epi_Dnmt3a_5.bam Epi_Dnmt3a_5.mhap.gz
Epi_Dnmt3a Epi_Dnmt3a_6 Epi_Dnmt3a_6.bam Epi_Dnmt3a_6.mhap.gz
Epi_Dnmt3b Epi_Dnmt3b_1 Epi_Dnmt3b_1.bam Epi_Dnmt3b_1.mhap.gz
Epi_Dnmt3b Epi_Dnmt3b_2 Epi_Dnmt3b_2.bam Epi_Dnmt3b_2.mhap.gz
Epi_Dnmt3b Epi_Dnmt3b_3 Epi_Dnmt3b_3.bam Epi_Dnmt3b_3.mhap.gz
Epi_Dnmt3b Epi_Dnmt3b_4 Epi_Dnmt3b_4.bam Epi_Dnmt3b_4.mhap.gz
Epi_Dnmt3b Epi_Dnmt3b_5 Epi_Dnmt3b_5.bam Epi_Dnmt3b_5.mhap.gz
Epi_Dnmt3b Epi_Dnmt3b_6 Epi_Dnmt3b_6.bam Epi_Dnmt3b_6.mhap.gz
Epi_Dnmt3l Epi_Dnmt3l_1 Epi_Dnmt3l_1.bam Epi_Dnmt3l_1.mhap.gz
Epi_Dnmt3l Epi_Dnmt3l_2 Epi_Dnmt3l_2.bam Epi_Dnmt3l_2.mhap.gz
Epi_Dnmt3l Epi_Dnmt3l_3 Epi_Dnmt3l_3.bam Epi_Dnmt3l_3.mhap.gz
Epi_Dnmt3l Epi_Dnmt3l_4 Epi_Dnmt3l_4.bam Epi_Dnmt3l_4.mhap.gz
Epi_Dnmt3l Epi_Dnmt3l_5 Epi_Dnmt3l_5.bam Epi_Dnmt3l_5.mhap.gz
Epi_EED Epi_EED_1 Epi_EED_1.bam Epi_EED_1.mhap.gz
Epi_EED Epi_EED_2 Epi_EED_2.bam Epi_EED_2.mhap.gz
Epi_EED Epi_EED_3 Epi_EED_3.bam Epi_EED_3.mhap.gz
Epi_EED Epi_EED_8 Epi_EED_8.bam Epi_EED_8.mhap.gz
Epi_Kdm2b_both Epi_Kdm2b_both_1 Epi_Kdm2b_both_1.bam Epi_Kdm2b_both_1.mhap.gz
Epi_Kdm2b_both Epi_Kdm2b_both_3 Epi_Kdm2b_both_3.bam Epi_Kdm2b_both_3.mhap.gz
Epi_Kdm2b_both Epi_Kdm2b_both_4 Epi_Kdm2b_both_4.bam Epi_Kdm2b_both_4.mhap.gz
Epi_WT Epi_WT_4 Epi_WT_4.bam Epi_WT_4.mhap.gz
Epi_WT Epi_WT_5 Epi_WT_5.bam Epi_WT_5.mhap.gz
Epi_WT Epi_WT_6 Epi_WT_6.bam Epi_WT_6.mhap.gz
Epi_WT Epi_WT_7 Epi_WT_7.bam Epi_WT_7.mhap.gz
ExE_Dnmt1 ExE_Dnmt1_1 ExE_Dnmt1_1.bam ExE_Dnmt1_1.mhap.gz
ExE_Dnmt1 ExE_Dnmt1_2 ExE_Dnmt1_2.bam ExE_Dnmt1_2.mhap.gz
ExE_Dnmt1 ExE_Dnmt1_3 ExE_Dnmt1_3.bam ExE_Dnmt1_3.mhap.gz
ExE_Dnmt1 ExE_Dnmt1_4 ExE_Dnmt1_4.bam ExE_Dnmt1_4.mhap.gz
ExE_Dnmt1 ExE_Dnmt1_5 ExE_Dnmt1_5.bam ExE_Dnmt1_5.mhap.gz
ExE_Dnmt3a ExE_Dnmt3a_1 ExE_Dnmt3a_1.bam ExE_Dnmt3a_1.mhap.gz
ExE_Dnmt3a ExE_Dnmt3a_4 ExE_Dnmt3a_4.bam ExE_Dnmt3a_4.mhap.gz
ExE_Dnmt3a ExE_Dnmt3a_5 ExE_Dnmt3a_5.bam ExE_Dnmt3a_5.mhap.gz
ExE_Dnmt3a ExE_Dnmt3a_6 ExE_Dnmt3a_6.bam ExE_Dnmt3a_6.mhap.gz
ExE_Dnmt3b ExE_Dnmt3b_1 ExE_Dnmt3b_1.bam ExE_Dnmt3b_1.mhap.gz
ExE_Dnmt3b ExE_Dnmt3b_2 ExE_Dnmt3b_2.bam ExE_Dnmt3b_2.mhap.gz
ExE_Dnmt3b ExE_Dnmt3b_3 ExE_Dnmt3b_3.bam ExE_Dnmt3b_3.mhap.gz
ExE_Dnmt3b ExE_Dnmt3b_4 ExE_Dnmt3b_4.bam ExE_Dnmt3b_4.mhap.gz
ExE_Dnmt3b ExE_Dnmt3b_5 ExE_Dnmt3b_5.bam ExE_Dnmt3b_5.mhap.gz
ExE_Dnmt3b ExE_Dnmt3b_6 ExE_Dnmt3b_6.bam ExE_Dnmt3b_6.mhap.gz
ExE_Dnmt3l ExE_Dnmt3l_1 ExE_Dnmt3l_1.bam ExE_Dnmt3l_1.mhap.gz
ExE_Dnmt3l ExE_Dnmt3l_2 ExE_Dnmt3l_2.bam ExE_Dnmt3l_2.mhap.gz
ExE_Dnmt3l ExE_Dnmt3l_4 ExE_Dnmt3l_4.bam ExE_Dnmt3l_4.mhap.gz
ExE_Dnmt3l ExE_Dnmt3l_5 ExE_Dnmt3l_5.bam ExE_Dnmt3l_5.mhap.gz
ExE_EED ExE_EED_1 ExE_EED_1.bam ExE_EED_1.mhap.gz
ExE_EED ExE_EED_2 ExE_EED_2.bam ExE_EED_2.mhap.gz
ExE_EED ExE_EED_3 ExE_EED_3.bam ExE_EED_3.mhap.gz
ExE_EED ExE_EED_8 ExE_EED_8.bam ExE_EED_8.mhap.gz
ExE_Kdm2b_both ExE_Kdm2b_both_1 ExE_Kdm2b_both_1.bam ExE_Kdm2b_both_1.mhap.gz
ExE_Kdm2b_both ExE_Kdm2b_both_3 ExE_Kdm2b_both_3.bam ExE_Kdm2b_both_3.mhap.gz
ExE_Kdm2b_both ExE_Kdm2b_both_4 ExE_Kdm2b_both_4.bam ExE_Kdm2b_both_4.mhap.gz
ExE_WT ExE_WT_4 ExE_WT_4.bam ExE_WT_4.mhap.gz
ExE_WT ExE_WT_5 ExE_WT_5.bam ExE_WT_5.mhap.gz
ExE_WT ExE_WT_6 ExE_WT_6.bam ExE_WT_6.mhap.gz
ExE_WT ExE_WT_7 ExE_WT_7.bam ExE_WT_7.mhap.gz
FGF FGF_1 FGF_1.bam FGF_1.mhap.gz
FGF FGF_4 FGF_4.bam FGF_4.mhap.gz
FGF FGF_5 FGF_5.bam FGF_5.mhap.gz
FGF FGF_7 FGF_7.bam FGF_7.mhap.gz
FGF FGF_8 FGF_8.bam FGF_8.mhap.gz
FGF_WNT_inside FGF_WNT_inside_2 FGF_WNT_inside_2.bam FGF_WNT_inside_2.mhap.gz
FGF_WNT_inside FGF_WNT_inside_3 FGF_WNT_inside_3.bam FGF_WNT_inside_3.mhap.gz
FGF_WNT_inside FGF_WNT_inside_5 FGF_WNT_inside_5.bam FGF_WNT_inside_5.mhap.gz
FGF_WNT_inside FGF_WNT_inside_6 FGF_WNT_inside_6.bam FGF_WNT_inside_6.mhap.gz
FGF_WNT_inside FGF_WNT_inside_7 FGF_WNT_inside_7.bam FGF_WNT_inside_7.mhap.gz
FGF_WNT_inside FGF_WNT_inside_8 FGF_WNT_inside_8.bam FGF_WNT_inside_8.mhap.gz
FGF_WNT_inside FGF_WNT_inside_9 FGF_WNT_inside_9.bam FGF_WNT_inside_9.mhap.gz
FGF_WNT_outside FGF_WNT_outside_2 FGF_WNT_outside_2.bam FGF_WNT_outside_2.mhap.gz
FGF_WNT_outside FGF_WNT_outside_3 FGF_WNT_outside_3.bam FGF_WNT_outside_3.mhap.gz
FGF_WNT_outside FGF_WNT_outside_5 FGF_WNT_outside_5.bam FGF_WNT_outside_5.mhap.gz
FGF_WNT_outside FGF_WNT_outside_6 FGF_WNT_outside_6.bam FGF_WNT_outside_6.mhap.gz
FGF_WNT_outside FGF_WNT_outside_7 FGF_WNT_outside_7.bam FGF_WNT_outside_7.mhap.gz
FGF_WNT_outside FGF_WNT_outside_8 FGF_WNT_outside_8.bam FGF_WNT_outside_8.mhap.gz
FGF_WNT_outside FGF_WNT_outside_9 FGF_WNT_outside_9.bam FGF_WNT_outside_9.mhap.gz
PD PD_1 PD_1.bam PD_1.mhap.gz
PD PD_2 PD_2.bam PD_2.mhap.gz
PD PD_3 PD_3.bam PD_3.mhap.gz
PD PD_4 PD_4.bam PD_4.mhap.gz
PD PD_5 PD_5.bam PD_5.mhap.gz
PD PD_6 PD_6.bam PD_6.mhap.gz

WGBS