| name | Description | Link |
|---|---|---|
| Alignment | Alignment and quantification of bulk RNA-seq data | Course |
| DGE analysis | Differential gene expression analysis of bulk RNA-seq data using DESeq2 | Course |
| Pathway enrichment | Pathway enrichment analysis | Course |
| Regulon analysis | Analysis of regulatory networks | Course |
| WGCNA | Weighted correlation network analysis | Course |
| DNB | Analysis of Dynamical Network Biomarkers (DNB) | Course |
| name | Description | Link |
|---|---|---|
| Alignment | Alignment and quantification of scRNA-seq data | Course |
| Seurat | Introduction to Seurat | Course |
| Seurat | Processing multiple samples using Seurat | Course |
| DEG analysis | Differential expression analysis using Seurat | Course |
| pySCENIC | Inference of TF activities using the pySCENIC pipeline | Course |
| CSN | Analysis of Cell-specific network (CSN) | Course |
| name | Description | Link |
|---|---|---|
| Alignment | Alignment of ChIP-seq and ATAC-seq using BWA | Course |
| ChIP-seq | Peak calling of ChIP-seq data | Course |
| ATAC-seq | Peak calling of ATAC-seq data | Course |
| Enrichment analysis | Enrichment analysis of genomic regions. | Course |