| Name | Description | Code | Document |
|---|---|---|---|
| AMD | an Automated Motif Discovery Tool | [Github] | [Full Text] |
| mHapTools | Processing of DNA methylation haplotypes | [Github] | [Documentation] |
| mHapTk | Characterizing mHap patterns | [Github] | [Documentation] |
| mHapSuite | Java implementation of mHapTk | [Github] | [Documentation] |
| TRAmHap | Prediction of gene expression by mHaps | [Github] | [Documentation] |
| mHapBrowser | DNA Methylation Haplotype Browser | [Github] | [Documentation] |